This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to login to dowload datasets from EGA - European Genome-phenome Archive?

Hi,

Recently my PI got an account on EBI-EGA, which we are able to login from the browser (Chrome and Safari), but when I tried logging into the account from the terminal (Ubuntu 20.04), I constantly receive errors -

java -jar EgaDemoClient.jar

Welcome to the EGA Secure Data Shell Demo.

Type 'help' for help, and 'exit' to quit.

Ega Demo Download Client Version: 2.2.3

EGA > login PI@instiute.in

Password: **

java.lang.NoClassDefFoundError: com/sun/net/ssl/HostnameVerifier java.lang.NoClassDefFoundError: com/sun/net/ssl/HostnameVerifier at uk.ac.embl.ebi.ega.egaapiwrapper.EgaAPIWrapper.<init>(EgaAPIWrapper.java:159) at uk.ac.embl.ebi.ega.egaapiwrapper.EgaAPIWrapper.<init>(EgaAPIWrapper.java:134) at uk.ac.embl.ebi.ega.egadbapiwrapper.EgaDBAPIWrapper.<init>(EgaDBAPIWrapper.java:53) at egademoclient.EgaDemoClient.login(EgaDemoClient.java:182) at egademoclient.EgaDemoClient.login(EgaDemoClient.java:176) at egademoclient.EgaDemoClient.login(EgaDemoClient.java:171) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:64) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at asg.cliche.ShellCommand.invoke(ShellCommand.java:69) at asg.cliche.Shell.processCommand(Shell.java:294) at asg.cliche.Shell.processLine(Shell.java:276) at asg.cliche.Shell.commandLoop(Shell.java:231) at egademoclient.EgaDemoClient.main(EgaDemoClient.java:1841) Caused by: java.lang.ClassNotFoundException: com.sun.net.ssl.HostnameVerifier at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:606) at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:168) at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522) ... 15 more

I have zero understanding of Java to understand and rectify these errors.

The method to login and download can be found at https://ega-archive.org/download/using-ega-download-client

P.S. The title of this post is similar, but it does not suit my purpose

Any help would be appreciated. Thanks in advance.

java
• 2,564 views • link
written by vinayjrao vinayjrao

While someone may provide an answer you can contact EGA help desk in mean time.

• 0 views • link
written by GenoMax GenoMax

1 answer

Thank you genomax, we wrote to them, and received a response saying that we need to use an updated version of the client, whose details can be fund here

Edit: Could you please tell me how to close the post?

• 0 views • link
written by vinayjrao vinayjrao

Closing post is an action used by moderators to close posts that may be off-topic. I moved you comment to an answer. You can accept it (green checkmark) to provide closure to this thread.

• 0 views • link
written by GenoMax GenoMax

Log in to answer this question.

More posts like this

No similar posts found.