What is the Ligand-RMSD meaning and calculation for peptide protein interaction?
hello,
I would like to know estimate the peptide binding site on the receptor. so i used the CABS-DOCK website, and I got the "Cluster name", "Cluster density," "Average RMSD (Å)", "Maximum RMSD within the Cluster (Å)", "Number of cluster elements" .
In several papers, they says "Ligand-RMSD value", so i wonder the "Lingad-RMSD" meaing and how to calculate Ligand-RMSD value?.
thank you in advance.
• 1,098 views
•
link
written
by
soobiney •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
AutoDock Vina Gives Wildly Different Results From Different Simulations Using Same Parameters
written by ac.research •
-
Molecular docking considerations
written by cwwong13 •
-
How to calculate RMSD and binding energy from the already docked ligand-receptor
written by gundalav
-
Residues in contact with ligands in PDB files
written by lumal29
-
How to identify the sequence in the receptor to which my peptide of interest bind to?
written by soobiney •
-
I'm predicting the protein-peptide structure. Why is the result different everytime?
written by soobiney •
-
How can I get the max overlap parameter / Is is possible to get fragment size from forward / revers…
written by qhsh9713 •
-
RMSD between two Ligands
written by Reyhaneh
-
How to use Autodock just for (re)scoring
written by se.raschka
-
Why Cluster Pdbs By Rmsd?
written by Harpalss
