How do I determine the amount of LRR of a specific Glyma (example Glyma.18G280300), using NCBI's Conserved Domain Database (CDD) tool "https://www.ncbi.nlm.nih.gov/cdd", it has 4 LRR, 6 LRR. How do I analyze this? Are there any better tools than CDD for this purpose?
Thanks.
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Bruna Avelino •
A simple Google search identifies many resources:
It is difficulty to nail down the exact number of repeats, especially if some of them are degenerate. You may want to try Pfam as well.
According to one of these predictors, the whole C-terminal part of your protein (starting at residue 834) may be comprised of LRRs.
https://lrrpredictor.biochim.ro/jobs/prot72901/prot72901.php
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Yes, thank you very much. In a job I saw that only using the NCBI's CDD was able to identify that it had X LRR domains, so I thought I was using it wrongly. Thank you for the tips.
Bruna Avelino
Why did you delete this post?