Is it normal that Trimmomatic is trimming DNA seq 2 days?
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Intuituvely I'd say no. How many reads in the file?
I cant say but its WGS of hepG2
I'm with ATpoint on this, unless you're running this on your smartphone or such, then it could be (but still not very likely)
No, i run on my computer :) Maybe i have a mistake in my code?
Is it even running? Check with
top, maybe it hang up and failed to exit properly. What is the size of the trimmed file currently, is it growing, isels -lto check.No, its not running! Do i need restart the command?
I would say yes, but it is also important to figure out why it stop (/is no longer) running .
Come on, give some details. Did it even start, is there an output file, how big is it, any errors in the log?
Its just sleeeping, not running. I dont know( Its 59gb
Its just sleeping, not running. I dont know( Its 59gb and yup, any error