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How to make KEGG plots based on the gene list with KO ID

Hello everyone,

I do have file with gene list and corresponding KO Id from KEGG pathway analysis which looks like this:

FUN_000082-T1
FUN_000109-T1   K00799
FUN_000143-T1
FUN_000188-T1
FUN_000231-T1
FUN_000233-T1
FUN_000387-T1
FUN_000399-T1   K00637
FUN_000399-T2   K00637
FUN_000410-T1

Could you please recommend me any R programs that can do pathway analysis based on these KO Ids and also generate the plots that can be used for publication.

Thank you,

Ambika

keggorthology r plots
• 1,414 views • link
written by AP • AP

How about clusterprofiler?

• 0 views • link
written by VBer VBer

Can it interpret the KEGG ids and assign the pathways associated with it?

• 0 views • link
written by AP • AP

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