Whats the format for PLINK .set file for epistasis analysis?
I'm trying to run variant interaction analysis in PLINK with the following comman:
plink \
--bfile plink \
--pheno pheno \
--epistasis \
--set-test \
--set list_of_variants \
--out plink
But as a reslt have a following error:
Error: Last token in --set file isn't 'END'.
The list_of_variants is a .set file which i though is just a list of rsIDs (in this case two lists separated with tab). Apparently, however, it is not the case. What the correct format for .set file in PLINK?
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