Error: Segment-Based Junction Search Failed With Err =-11?
What does this error mean, and is there a way around it?
EDIT: I am sorry I should have given more details.
I am trying to run cuffmerge on a cluster. I just keep getting this error. I have 7 data-sets that i want merge the assembled transcriptome from, and then use this information with cuffdiff to estimate the changes in abundances of different transcripts.
1 answer
check @bcalder response in http://seqanswers.com/forums/showthread.php?t=4063 (some problem with the GTF annotation). But you can also look for help writing to tophat.cufflinks@gmail.com
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where? how? when? what?
I have found that it could be due to RAM: A: Tophat2 : Error: Segment-Based Junction Search Failed With Err =-11