How to convert csv with Kmer, Window, Read, Strand, and a value into something I can visualize in IGV (or similar)?
I have a csv (comma) file that has the following as an example:
#Kmer,Window,Ref,Strand,Coverage,Modified
GAACA,70203111-70203115,chr10,-,108:108:108:108:108,mod
I also have the original SAM and BAM files that the original data (rna-seq) was used for mapping against genome.
How do I best visualize this? I wanted to visualize the rows that have modified=mod (or a can convert them to a boolean 1 or 0 too).
I was thinking of looking at it on IGV, but what file format can I convert this csv to - to do that? Thanks!
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