How to check scaffold of a SNP with assembled chromosomes and find out that scaffold is placed on which chromosomes?
I performed a re-sequencing from honeybee Apis cerana cerana we got many scaffolds ID for the locus of SNP because at that time the genome of Apis cerana was not assembled on the level of chromosomes. just last year it assembled on the chromosomes. My question is here, how to search the scaffold and SNP position and find out the locus of target SNP is on which chromosomes? Thanks in advance for your answering
• 751 views
•
link
written
by
hassanyar •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Manually add invariant sites from a FASTA to VCF?
written by tal.shalev •
-
Selective sweep for scaffold level reference genome
written by Mel Kile •
-
Calling SNPs for long-read polyploid species
written by liang795 •
-
Aligning transcript with known position for SNP to draft genome to find the position of SNPs
written by dasakan •
-
Using RepeatModeler for novel assembled genome
written by nehleen11 •
-
Code to select randomly 1 SNP per scaffold
written by angelaparody •
-
How to get a unique target gene for each SNP from different chromosomes/genes in a list at once?
written by cmcouto.silva •
-
Using satsuma output when creating manhattan plots
written by ash.t.cook •
-
Assembling a chromosome for an E. coli strain using contigs/scaffolds from two WGS projects
written by rnnh •
-
how to assemble scaffolds to chromosome??
written by d.chandanareddy.92 •
