How does FastQTL deal with strand
FastQTL phenotype.bed input does not have strand column as in QTLtools. How does the software deal with strand? I guess a related question would be say gene1 is on the reverse/minus strand in GTF file. Should its end position in GTF file be the TSS (transcription start site) for fastQTL phenotype.bed input? Thanks in advance.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
written by Rafael Soler •
-
How to choose one TSS for every gene using Gencode annotation file?
written by Apex92 •
-
Distinguish between forward strand, plus strand, sense strand
written by tien •
-
Force BlastN to align only to minus strand of subject
written by mwittep •
-
mapToTranscripts() with + and - strand regions
written by newscient •
-
TSS Enrichment Score Tool
written by BioICoder •
-
Question about mapping motif binding sites to genome location
written by kanwarjag
-
Getting No. of reads from BAM by pysam (ChIP-seq)
written by BioDH •
-
How are tss_id gtf attributes determined? How do they relate to TSS annotations?
written by blaise.li__biostars •
-
Where Is The Tss Of A Gene Located In A Bed File?
written by KCC
