Hello everyone, I actually made several assembly of eukaryotic genomes and I found some missasemblies in the file by mapping reads against the fasta assembly file.

So I wondered if someone knew a performant tool in order to identify an correct misassemblies in scaffolds for eucaryotic genomes specially?

I know for instance REAPR from Sanger or MEC but I do not really know if there is no better tool for eucaryotic genome?

Thank you very much