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Variations in chromosomal positions of column 1 and column 3 SNPnexus tool

Hi everyone! I observed differences in chromosomal positions given in first column "VARIATION ID" e.g., chr10:89622240:C/CGGC:1

and third column "Position" e.g., 89622241.

Here you can see the difference of 89622240 and 89622241

Should not these locations be the same? Which location should be followed as SNP position?

Thanks.

snpnexus variation chromosomal positions
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updated by JC JC • written by syedahamdani94 • syedahamdani94

1 answer

You should ask the developers at help@snp-nexus.org but I can expect that the VariationID is 0-based and the Position is 1-based

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written by JC JC

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