HTseq feature count handling of transcripts with shared exons?
I am curious to know how htseq will assign a read to a particular transcript if said read maps to a shared exon between two isoforms? If anyone has any experience with this or can offer any insight it would be greatly appreciated. Thank you in advance.
1 answer
Log in to answer this question.
More posts like this
-
Create seurat inputs without cellranger
written by ankit.yadav •
-
Using the Same Background for ATAC-seq Peak Calling Across Two Samples
written by David •
-
Forum: Recommendation sought for differential exon usage of a single gene
written by nick_b55 •
-
Forum: Opinions on SLAM-Seq for Differential Gene Analysis
written by dk0319 •
-
Forum: Pacific Bio Long Reads vs Illumina Short Reads
written by dk0319 •
-
Extracting Unmapped Reads from BAM files using Rsamtools
written by dk0319 •
-
Finding isoform in RNA-seq data
written by mari.felix5723 •
-
Association study using germline SNPs, somatic mutations in tumors and clinical data from TCGA
written by rGun •
-
CNV software for Ion Torrent data
written by quantrum75 •
-
Read count per exon per transcript
written by wan.fahmi •
