Problem with long EBSeq runtime
Hi Biostars,
I am running EBSeq on 43 samples (7 conditions) to find differentially expressed isoforms. I ran the rsem-run-ebseq command on a txt file containing the calculated expression values of each isoform. However, the job seems to be taking a long time. It has been 1 hour and it is still running. Is the runtime for EBSeq usually this long?
I previously ran it on another experiment with 13 samples (2 conditions) and it took around 10 mins. Has anyone else faced the same problem?
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nattzy94 •
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If the job is running, consuming CPU cycles and is producing some output then be patient. You seem to have a more complex experiment at hand and sometimes the calculations don't scale linearly.