does the order matter when we put gene ids in connectivity map(cmap)?
Hi, I'm currently new to bioinformatics and kind of lost here... I'm currently trying to use connectivity map(cmap) through
I submitted up regulated and down regulated gene ids (converting my genes to affy hg-u133a
I was wondering - if the order of the up regulated genes(or down regulated genes) does not matter.
Also, while converting the genes (using biomaRt) to affy hg-u133a (in my case from affy hg-u133 plus 2 -> hg-u133a)
it creates multiple ids for just one id, like below
209396_s_at ------> 209396_s_at
209396_s_at ------> 209395_at
Is it necessary to include both results(209396_s_at, 209395_at) in my list?
• 767 views
•
link
written
by
orzrzlyo •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Using CMAP to find drugs that affect a given GO category - does a tool exist?
written by Qroid •
-
[SOLVED] GSEA - Strange Results interpretation - Error in DESEQ2 ?
written by Evan •
-
Generating cMap barView plots
written by a.l.f •
-
Use cmap with rna-seq results
written by bioinformatics •
-
Perturbation scan id in Connectivity Map data
written by elisa.micarelli •
-
Different versions of the same type of Affymetrix Array in GEO?
written by bn •
-
Need help understanding variability of probe set intensities for microarray data.
written by blakeoft •
-
how can I convert gene symbol to affymetrix IDs ?
written by Mo
-
Connectivity Map - Unable To Load Probe Ids
written by Olivier
-
Compare 2 Affymetrix Probesets
written by secretjess
