Can someone explain this TSS 2kb annotation? Especially, what does -1 & 1 tells about the annotation?
Would you please kindly explain the features of this annotation .
chrM 1307 5308 1 MT-ND1 ENSG00000198888
chrM 2570 6470 1 MT-ND2 ENSG00000198763
chrM 3904 7904 1 MT-CO1 ENSG00000198804
chrM 5576 9586 1 MT-CO2 ENSG00000198712
chrM 6366 10346 1 MT-ATP8 ENSG00000228253
chrM 6517 10557 1 MT-ATP6 ENSG00000198899
chrM 7207 11207 1 MT-CO3 ENSG00000198938
chrM 8059 12079 1 MT-ND3 ENSG00000198840
chrM 8470 12460 1 MT-ND4L ENSG00000212907
chrM 8760 12760 1 MT-ND4 ENSG00000198886
chrM 10337 14337 1 MT-ND5 ENSG00000198786
chrM 12673 16674 -1 MT-ND6 ENSG00000198695
chrM 12747 16747 1 MT-CYB ENSG00000198727
chr5 1378067 1382067 -1 LINC01511 ENSG00000250584
chr15 40356235 40360235 1 DISP2 ENSG00000140323
chr13 49626299 49630299 1 ARL11 ENSG00000152213
chr22 18525802 18529802 1 TMEM191B ENSG00000278558
chr20 1327239 1331239 -1 SDCBP2 ENSG00000125775
chr13 57158632 57162632 1 PRR20D ENSG00000227151
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It probably refers to the plus/minus strand of the genome, so TSS location. I only checked two genes manually. The format I do not know, it is not BED because strand is not in column 6. Please indicate sources of files when you ask questions, that can make it easier to comment.
The ranges aren't all 1, so it might be TSS clusters too instead of individual TSSs.