I have SNP genotype results from GenomeStudio represented as AA, AB, and BB (for cotton). To use these results in PowerMarker, should I rename them …

Hi, every one I have csv file contains many rows, I need extract all rows that have AB value in all columns this sample from …

Hello, I have a data set like this "AA","AB","BB" and I need calculate minor allele freq and keep only these which are bigger than 5%. …

I have performed an analysis that yields the probability that a diploid DNA sequence is inherited from species A (genotype = AA), inherited from species …

I have a file with the LRR (Log R Ratio) and BAF (B allele frequency) for each sample and each SNP marker. I need to …

Hello, I have a vcf file that contains 200 DO mouse samples. I want to filter the file by SNPs that have at least 5 …

Hi, Could anyone help me out with following question, I want to perform Principal Component Analysis (PCA) on Genotype input data for SNPtest. I know …

Hi all, I have genotype data obtained through an Infinium array. The genotype is either AA, AB, BB. I would like to find the SNP …

Hi, I downloaded ENCODE genotype calls from UCSC table browser. The genotypes were obtained with the Illumina 1M-Duo. But they come in the AA/AB/BB format. …

<p>Hi, I have a 3x3 table of penetrance values (one for each combination of genotypes for two loci, AA-AA, AA-AB, AA-BB, AB-AA,...). I also have …