How to count the paired end reads number in given regions
Hi,
I have a celltype.bwt2pairs.bam file from HiC-Pro. I would like to count the number of the paired reads in given regions, for example, how many paired read on the region chr1:80426-82426 and its mate on the region chr1:75071-77071.
Thanks in advance,
Kun
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ben.kunfang •
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