How to retrieve multiple genbank (full) records using Edirect or other tools?
I want to download all the archaeal genbank (full) records; after the following search in the NCBI Nucleotide search box.
archaea[filter] AND (complete genome[ti]) NOT shotgun[ti] NOT plasmid[ti]
Browser download is taking too long, I want to run a script or use Edirect command line to download to a server. Edirect, Perl, Python or R solutions are ok.
Thank you.
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You can't download full genome sequences using Entrezdirect. You can parse assembly reports available from GenBank to get the ftp links and get data that way.