Sort Me RNA newest version no databases · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

Sort Me RNA newest version no databases

Hello, I am trying to do ribosomal RNA removal with latest version of SortMeRNA (v4.2.0). However I cant find ribosomal reference files in program download. In version 2.0 these files are present. However I cannot use older version, because I am working with gz files, and v 2.0 seems not to recognize them. Anybody encountered the same issue?

rna-seq software error

• 1,294 views • link

updated 5.8 years ago by Biostar

• written 5.9 years ago by storm1907 •

see if you can use reference files from here: https://github.com/biocore/sortmerna/tree/master/data/rRNA_databases

• 0 views • link

written 5.9 years ago by cpad0112

0 answers

No answers yet.

Log in to answer this question.

More posts like this

Help with find_circ troubles
written 3 months ago by Eduarda •

Hello everyone, I am working with the find_circ program for circRNA detection in honey bee transcriptomes. So far, I have successfully generated the following files: …
Circuitscape.jl Julia- 1.7.1 GDALError (CE_Failure, code 10): Pointer 'hDS' is NULL in 'GDALGetRast…
written 4.6 years ago by RedSkyPlum •

Hello! Currently using Circuitscape on Julia v.1.7.1 and am trying to generate current maps (pairwise) with resistance file and nodes file. I have ran this …
cannot download refseq genomes
written 5.4 years ago by sapuizait •

Dear all I have been to trying to download all complete bacterial genomes (specifically their faa aa sequences) from refseq in order to create a …
Access to public exome files
written 5.5 years ago by storm1907 •

Hi, I am in need to run association tests, such as SKAT, etc, for allelic variant characterization. To do this, I also need to download …
Mauve program will not open
written 6.7 years ago by hoffmavl1 •

I cannot for the life of me get mauve to execute. Previously I had been using the 2015-02-26 version of mauve without issue and upgraded …
VEP dbNSFP plugin GRCh37
written 7.3 years ago by cocchi.e89

I am working with VEP and I found this interesting plugin: [**dbNSFP**][1]. Based on VEP instructions: *Release 3.5a of dbNSFP uses GRCh38/hg38 coordinates and GRCh37/hg19 …
PSIPRED, how to install and make it work?
written 8.9 years ago by ac.research •

Dear All, I am trying to setup PSIPRED to run a secondary structure prediction but the README.md file is not detailed enough for a beginner …
minfi installation error
written 10.0 years ago by niutster

Hi, I am trying to install minfi package on server since the installed R on server isnot the latest version i have to use some …
Bowtie2 align not working
written 12.2 years ago by K.Nijbroek •

Hi All, I've downloaded the latest version of Bowtie2 for Windows ([bowtie2-2.2.3-mingw-win64.zip][1]), and added the executables directory to PATH. Whenever I try to run something …
Where Can I Download Gatk 2.5 Version?
written 13.1 years ago by newDNASeqer

I need to install GATK, but cannot install its latest version 2.6, because the server I'm working on only has Java 6. I don't have …