This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Homer: removeOutOfBoundsReads.pl command cannot find chromosome size file

Hi, I'm using Homer for NGS analysis on USCS browser. I am using removeOutOfBoundsReads.pl command on the tag directories but I keep getting an error that Homer cannot find chromosome size file. I have tried installing homer and hg19 again, but this hasn't resolved the error

This is what the error looks like: https://ibb.co/NyMHdB1

next-gen rna-seq homer atac seq

1 answer

enter image description here

Log in to answer this question.