Convert ID for Human Gene 1.0 ST Array
Hi, I am looking for a R package to convert IDs for the 1.0 ST array from affymetrix. The IDs have the format below:
7892501
7892501
...
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GenoMax
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Palgrave •
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Palgrave •
2 answers
Some more automated ways I just posted here: C: Why bioMart query results in a low coverage of annotations
probeIDs
require(hugene10sttranscriptcluster.db)
annotLookup <- select(hugene10sttranscriptcluster.db, keys =probeIDs,
columns = c('PROBEID', 'ENSEMBL', 'SYMBOL'))
require(hugene10stprobeset.db)
annotLookup <- select(hugene10stprobeset.db, keys = probeIDs,
columns = c('PROBEID', 'ENSEMBL', 'SYMBOL'))
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Kevin Blighe
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