How to convert bfiles(bim/bed/fam) to PED and MAP file back?
I converted PED and MAP files to bfiles using make-bed option to change the SNP identifiers, and want to convert them to PED file back. How could I do this?
I converted .vcf genotype file to .ped using plink like so: ./plink --vcf hgdp_wgs.20190516.full.chr22.vcf.gz --maf 0.01 --recode --out hgdp_chr22 When I try to convert a …
Hi I have converted files gen/sample (using gtool) to ped/map to be used in PLINK with phenotype coded as (0=unaffected 1=affected). However, when I converted …
I've converted PLINK (PED & MAP) files to fastPHASE input format (`--recode-structure`) for imputation. After imputation, I want to convert fastPHASE output file back to …