problem on ballgown

Hi everyone recently i analyzed my data using stringtie and ballgown, but in the final step, the column of gene name is empty and the column of geneiD in almost all of rows is showing MSTRG. what does it mean? and how can I find my gene names ??

my result:

       geneNames     geneIDs    feature     id
3657           .     MSTRG.1 transcript   3657
3662           .     MSTRG.1 transcript   3662
3666           .     MSTRG.1 transcript   3666
3667           .     MSTRG.1 transcript   3667
8020           .     MSTRG.2 transcript   8020
8342           .     MSTRG.3 transcript   8342
8404           . NR_136328.1 transcript   8404
21445          .     MSTRG.4 transcript  21445
21446          .     MSTRG.4 transcript  21446
21447          .     MSTRG.4 transcript  21447
21448          .     MSTRG.4 transcript  21448

rna-seq deg ballgown r

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written 6.0 years ago by mo.ghasemi717 •

See previous threads mentioned in answer here : how to display gene names rather than MSTRG (using ballgown)

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written 6.0 years ago by GenoMax

0 answers

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