Hello all!

So I have two experiments done on GRCh38, however, my collaborator and I used different ensembl gene annotation version to obtain our coordenates of interest. He used ensembl version 98 and I used ensembl version 95. So, we have this:

grep "ENSG00000237491" Homo_sapiens.GRCh38.98.chr.gtf | grep -P '\bgene\b' (Him)
1   havana  gene    778747  810065  .   +   .   gene_id "ENSG00000237491"; gene_version "10"; gene_name "LINC01409"; gene_source "havana"; gene_biotype "lncRNA";

and this:

$ grep "ENSG00000237491" Homo_sapiens.GRCh38.95.chr.gtf | grep -P '\bgene\b' (Me)
1   havana  gene    778770  810060  .   +   .   gene_id "ENSG00000237491"; gene_version "8"; gene_name "AL669831.5"; gene_source "havana"; gene_biotype "lincRNA";

My question is how can I compare these regions to find out if they correspond to the same thing? We are looking for differences in splicing pattern (so, intron retention, exon skipping, alternative 5' and/or 3' end usage, these stuff). Only the ensembl version is different, the paired-end illumina read alignment is the same.

Thanks in advance!

Best!