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qp3pop missing pop error?

Hello, I want to run "qp3Pop" (for F3 test) but, I got some error messages.

First, this is my par file

genotypename: HGDP_938_forf3.eigenstratgeno

snpname: HGDP_938_forf3.snp

indivname: HGDP_938_forf3.ind

popfilename: f3testlist.txt

And the errormessage says,

fatalx : fatal error (probably missing pop)

Aborted (core dumped)

Missing pop? I guessed that I wrote some mistakes with my popfile (f3testlist.txt), but it doesn't have any problem.

This is the log file

qp3Pop: parameter file: f3par

THE INPUT PARAMETERS

PARAMETER NAME: VALUE

genotypename: HGDP_938_forf3.eigenstratgeno

snpname: HGDP_938_forf3.snp

indivname: HGDP_938_forf3.ind

popfilename: f3testlist.txt

outgroupmode: YES

qp3Pop version: 650

number of triples 36

nplist: 36

snps: 153626

number of blocks for block jackknife: 549

pop: Yoruba

pop: Adygei

pop: Mozabite

it stopped here What would be the problem with my program?

Thanks!

q3pop admixtools f3test

1 answer

Hey, did you solve your issue? I am stuck in the exact same situation and can't figure out what is wrong with my input data.

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