Bootstrap values on phylogenetic trees with polytomies

I have a tree with unresolved polytomies and I would like to find bootstrap support for this tree. Is there any software which can do this task?

I tried raxml, but it seems to me that it accepts only bifurcating trees.

bootstrap tree polytomies

• 1,180 views • link

written 6.0 years ago by bvm •

0 answers

No answers yet.

More posts like this

Compute bootstrap values on consensus tree
written 2.4 years ago by pablo

Dear, I work on 16S pacbio dataset. I used `DADA2` to get my taxonomy, and now I would like to use `raxml-ng` to get a …
Advice on publishing maximum likelihood trees
written 7.3 years ago by weedy23 •

Hi, I am relatively new to phylogenetic analyses so I have a simple question. I have done a multi-species maximum likelihood analysis in Garli. I …
Measuring the difference or similarity between two phylogenies
written 10.2 years ago by confusedious

Hello everyone, I'd like to take two phylogenies for a given nucleotide alignment and create a measure of the similarity between the two alignments. Branch …
[CIPRES] Raxml bootstrap value not shown!
written 10.9 years ago by ling-shan.yu10 •

Hi, I can manage displaying the trees in FigTree, but I need to make a tree with the bootstrap support values.Displaying the NodeLabels doesn't give …
Using ML tree or bootstrapped tree
written 11.1 years ago by GR

Hi Everyone, I am new to phylogenetics and using RAXML to generate my phylogenetic trees. I did bootstrapping (1000) to get the support values on …
'Tangle plots' for phylogenies containing polytomies in R?
written 11.3 years ago by confusedious

Hello folks, I am working on comparing various phylogenetic methods and would love to produce some plots like the one shown below: <img alt="" src="http://www.coppelia.io/wp-content/uploads/2014/07/tangle.png" …
Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
written 11.8 years ago by confusedious

I am currently using the excellent R packages 'Phangorn' and 'ape' to do some parsimony-based phylogenetic analysis with the 'pratchet' fuction (parsimony ratchet) and have …
Merging Bayesian probability values with bootstraps from ML
written 12.2 years ago by Adrian Pelin

Hello, I have an alignment which I used to produce ML (with bootstrap) and Bayesian trees. Is there any way I can use a tool …
Merging Bootstrap Values And Posterior Probabilities
written 12.4 years ago by Pappu

I made phylogenetic trees using RaxML and MrBayes. I am wondering how to merge the bootstrap values and Bayesian posterior probabilities of common branches to …
Which Tree Is Better In Mega Output
written 12.6 years ago by Kash

Hi all, I generated some phylogenetic trees using MEGA software. It gave me a original tree and a bootstrap consensus tree. I want to know …