How to download a Pfam database for hmmer searches?
Hi all,
I recently downloaded HMMER in order to use hmmer search to identify protein sequences.
I know its possible to do your own database in hmmer but I would like to use the Pfam database which is way more complete.
First, can the Pfam database be downloaded? And if so, where? I can't seem to find it online... Then, how large is it?
Thank you so much in advance for your help!
Have a great day
1 answer
PFAM files: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release
Pfam-A.hmm - Pfam-A HMMs in an HMM library searchable with the hmmscan program.
Pfam-A.hmm.dat - Data associated with each HMM required for pfam_scan.pl
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