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SARS Cov2 NGS data analysis pipeline

Hi,

Anyone can introduce tools (pipelines) that are suitable for analysis of the coronavirus NGS data (Illumina MiSeq platform) including quality control, phylogeny and variant calling?

Thanks!

sars cov2 data analysis pipeline
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updated by trausch trausch • written by arash.iranzadeh1980 • arash.iranzadeh1980

2 answers

Hi,

You can refer to this link: https://github.com/CDCgov/SARS-CoV-2_Sequencing#sequencing

This GitHub page from the CDC provide in-depth information on NGS practices and Bioinformatics approaches to sequence Sars-Cov-2.

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written by Akshay Zawar • Akshay Zawar

We recently set-up an NGS data analysis pipeline for short-read SARS-CoV-2 sequencing.

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written by trausch trausch

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