This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to download seqret method in Linux?

I am a beginner. I got stuck during a Linux exercise. Here

cat AF086833.gb | seqret -filter -feature -osformat gff3> AF086833.gff

So I referenced http://emboss.sourceforge.net/download/.

I followed the instructions on the homepage link above to install seqret,

and there was an error in the compile phase.

The picture shows the directory status and the result of running "make".

The result of "make" is not over by repeating some specific sentences. So the next step does not proceed.

compile sentence : ./configure make

and i success "./configured" but not "make" what can i do...?

the directory status

the result of running "make"

gene
• 4,223 views • link
written by seabed0705 • seabed0705

What do you mean "blocked"?

• 0 views • link
written by Joe Joe

Please, post your output error!

• 0 views • link
written by brunobsouzaa brunobsouzaa

1 answer

Use conda to install the emboss package. seqret is part of the emboss distribution:

Install conda as described in:

https://docs.conda.io/en/latest/miniconda.html

then install emboss from the bioconda channel:

conda install -c bioconda emboss

test the package works:

seqret -h

prints:

Read and write (return) sequences
Version: EMBOSS:6.6.0.0
...
• 0 views • link
written by Istvan Albert Istvan Albert

Log in to answer this question.

More posts like this