How to extract 5'UTR sequences by TSS coordinates?
Hi, Anyone can suggest a tool for extraction of 5'UTR sequences by 1bp TSS coordinates? Mostly, I need to be able to find 5'UTR of downstream ORFs from the main one, like in case that TSS is located downstream to the first exon. Thanks, Arik
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As far as I know there's no direct tool to do that but you can get that information to extract that fro gencode gtf using a custom script. Its impossible to get that information just from TSS. You need to know the UTR coordinates.
If you provide the organism and an example of what your 1bp TSS coordinates look like - I can try