So should I just download one file and work with it ?
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Issues analysing splitted fastq files with fastqc
Hello, I've downloaded some fastq files using fastq-dump --splt-files which results in 2 fastq files; the problem i have is that i don't know what's the meaning of each file and how i can analyse them with fastqc. can anyone help
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youssef.snoussi1994 •
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FastQC only works on individual files and doesn't take into account paired end sequencing.
fastqc *fastq,gz
or
fastqc *fastq
Depending on the files you have, one of these should generate the standard quality control output for each of all the files you downloaded.
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