Hi,

Is there a way to combine consecutive bins with the same targeted gene name in the ".cnn" output of cnvkit? I can see the target gene regions were split into multiple regions.

chromosome start end gene depth log2

chr1 16254572 16254836 SPEN_11 1111.94 10.1189

chr1 16254836 16255101 SPEN_11 1156.46 10.1755

chr1 16255101 16255365 SPEN_11 1254.16 10.2925

Thanks

Parvathi.