Is wget -i your_list what you are looking for ?

Put the links in a file (one per line). Then use wget -i url.txt (if your file is called url.txt. If you want to use curl instead then use xargs –n 1 curl –O < url.txt.

After making a input_files.txt file with only SRR names and put this in a input_file_folder. You can use this script:

cd input_file_folder
NUMB_LINES=$(wc -l input_files.txt|cut -f 1 -d ' ')
for i in $(eval echo {1..$NUMB_LINES}); do
FILE_NAME=$(head -n $i input_files|tail -n 1 |cut -f 1)
VAR1=$(head -n $i input_files|tail -n 1 |cut -f 2)
VAR2=$(head -n $i input_files|tail -n 1 |cut -f 3)
INPUT=$(echo ftp:link)
wget -i $INPUT -O $FILE_NAME
done