Counting RNA-seq reads mapped to mRNAs (mouse)
Hi!
I need to count the number of reads that can be mapped to mouse mRNAs in a RNA-seq dataset. Much appreciated for any suggestions.
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Ram
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BA20061006 •
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BA20061006 •
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Use featurecounts or htseq-count. It needs a mouse gtf file too. You can download it from gencode or ucsc.
I will give them a try. Thanks!