RSEM isoform.results outputs for edgeR
I was hoping to quantify differential transcript expression (DTE) for my RNA-seq data. Following transcripts/isoform quantification using RSEM, I've got individual "sample_name.isoforms.results" files (column name below). I know that edgeR can work with expected counts as output by RSEM, but not sure how to process/prepare those files for edgeR. Any tips?
Many thanks, Wei
transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct
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weichengz •
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