How can i know number of duplicated genes using Prokka or roary outputs
Hello Biostar
Please i did annotation of bacteria strains susing Prokka and pan genome analysis using Roary what i want to know is how how can i knwo number of duplicated genes in each strain and where i can find this information ( prokka files or roary files , and in which file exactlly )
Thank you very much
• 1,014 views
•
link
written
by
elkassah96 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Pangenome analysis
written by erinda •
-
Virus core genome
written by Salsabil •
-
Count number of Genes in GFF3 file (Prokka output)
written by Bioinfo •
-
Unique genes roary
written by Sissi
-
How to convert gbk file to roary tool acceptable gff3 format?
written by Kumar
-
Pan genome reference for BRIG
written by jellila •
-
what is the parametrs i should take in consideration to choose the best assembly
written by Bioinfo •
-
how can i determine the couverture (coverage ) of my reads on the whole genome using mapping (bowti…
written by Bioinfo •
-
Maintaining gene ID correspondence across strains
written by Anand Rao
-
How to find out the specific strain in NGS data?
written by lakhujanivijay
Output files for
Roaryappear to be well described. Have you looked at that information?