are there some tools or software can find the different peak of ATAC-seq
Hi i got the ATAC-seq peaks by MACS2 cellpeak, How can i find the different peak between case and cotrol? thank you!
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Rory Stark
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zhao03 •
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zhao03 •
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Another Bioconductor package, DiffBind, is often used to find differential ATAC peaks using a straightforward ChIP-seq workflow.
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Rory Stark
You could take a look at this paper: https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-020-00342-y . They provide the scripts for doing what you want to do with csaw
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eyleen.corrales •
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