Spaces in chromosomes when plotting Manhattan plots
Hi all. I am using qqman manhattan function for plotting. I have used this function several times before and never had these issues. I have three columns, CHR, BP and P and used the function as ;
manhattan(Results,
genomewide = -log10(threshold), suggestiveline = FALSE,
logp=T)
where threshold is 0.05. However, blank spaces within chromosomes appear and I don't know why this is happening. I am unsure of how to go about solving this issue. If anyone can help, that would be great.
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