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Getting metabolic pathway annotation from gene symbols

Dear all,

I have a long list of such bacterial gene symbols: ihfA rybB raiA.EST3UTR hupB.3UTR acpP malM infA.3UTR cspB.EST3UTR ihfA.3UTR cspD.EST3UTR rbsB.rbsK.IGT ftp.EST5UTR ... and I would like to get the annotations about in which pathway the gene products are invlved, for example, according to KEGG. I would be grateful for any hint!

genome sequence
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written by macbas • macbas

1 answer

I managed to do it. At first one must have cleaned-up gene symbols (everything before the dot, it can be easily done with R, Python or even Bash, I guess) and then just copy-paste or load as a .txt format into Panther.

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written by macbas • macbas

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