creating gen file from bcftools based on minor allele frequency · Biostar

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creating gen file from bcftools based on minor allele frequency

Dear all,

i am using impute2 for a research. i have the vcf files for which i used bcftools to generate a gen file as per the format required by impute2. is there a way that i can filter out the gen file for low allele frequency positions or even create one using bcftools from the scratch applying that filtering?

genome gen bcftools minor allele impute2

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written 6.1 years ago by switch.reem •

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