Can someone explain this about sliding window
I am trying to analyze this with 2 programs .For the first sentence I am using the web program compseq and for the second one Cusp
- Codons are not read as trinucleotides in a sliding window.
- Codons are also trinucleotides, but NOT overlapping. These must be read in the correct reading frame.
What are the differences between both ?
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sliding windowcan use astepoption. When you are reading codons you can use a step of3to keep the window in frame once you start with one frame.Slide the window over by 1 at start to choose next frame.