This is a test version of Biostars. For the public version, visit https://www.biostars.org.
pathview produce 3 output files : what are they?

Hello all.

Pathview produces 3 output files with the following command :

pathview(gene.data = foldchanges, pathway.id = '00040', speices = 'hsa', same.layer = F)

  1. hsa00040.pathview.png (this plot have red or green colors (representing foldchanges))

  2. hsa00040.png (some are colored in green)

  3. hsa00040.xml (I have no idea)

Could you please tell me the difference between these files? What are green colors meaning in hsa00040.png?

pathview rna-seq
• 2,953 views • link
written by okna0215 • okna0215

Yes it is bioconductor package. According to manual : 1. hsa00040.pathview.png : original KEGG pathway map 2. hsa00040.png (some are colored in green) : layered map with given values (foldchanges) 3. hsa00040.xml : data file

• 0 views • link
written by okna0215 • okna0215

0 answers

No answers yet.

Log in to answer this question.

More posts like this