Thank you, it worked for me!
• 0 views
•
link
written
by
horeyezonr •
Quast 5.0.2 Problem
Hi everyone,
I'm trying to run quast with python ./setup.py test to verify installation. And then it shows this error.
module 'cgi' has no attribute 'escape'
Traceback (most recent call last):
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/EGG-INFO/scripts/quast.py", line 307, in <module>
return_code = main(sys.argv[1:])
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/EGG-INFO/scripts/quast.py", line 148, in main
from quast_libs import basic_stats
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/quast_libs/basic_stats.py", line 15, in <module>
from quast_libs.circos import set_window_size
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/quast_libs/circos.py", line 25, in <module>
from quast_libs.icarus_utils import get_assemblies, check_misassembled_blocks, Alignment
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/quast_libs/icarus_utils.py", line 15, in <module>
from quast_libs.html_saver.html_saver import trim_ref_name
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/quast_libs/html_saver/html_saver.py", line 18, in <module>
from quast_libs.site_packages.jsontemplate import jsontemplate
File "/usr/local/lib/python3.8/dist-packages/quast-5.0.2-py3.8.egg/quast_libs/site_packages/jsontemplate/jsontemplate.py", line 583, in <module>
'html': cgi.escape,
AttributeError: module 'cgi' has no attribute 'escape'
ERROR! exception caught!
• 3,640 views
•
link
updated
by
horeyezonr •
•
written
by
augustofranco93 •
•
written
by
augustofranco93 •
1 answer
If you open up the file jsontemplate.py, that is where the error is occurring:
You will first need to 'import html' somewhere near the beginning of the script, preferably where the other modules are imported. Then at line 583, replace "cgi.escape" to "html.escape"
• 0 views
•
link
written
by
bstrope15 •
Log in to answer this question.
More posts like this
-
mSINGs - pipeline
written by esimonova.me •
-
deepTools : No module named cycler
written by mbk0asis
-
Biopython for Beginner
written by faisala85 •
-
idr command line error
written by chaudharyc61 •
-
error while Kissplice run
written by KG •
-
biom convert is not working
written by tokeemdtareq •
-
Error in running kissplice2reftranscriptome
written by c.evang •
-
troubleshooting: error on run of kissplice2refgenome
written by celine •
-
Error while running MACS2 ATAC-seq data
written by Benn
-
Weird Numpy Error When I Try To Install Weblogo 3... Any Ideas?
written by margiezilla
Please use the formatting bar (especially the
codeoption) to present your post better. You can use backticks for inline code (`text` becomestext), or select a chunk of text and use the highlighted button to format it as a code block. I've done it for you this time.