Structural Variants in a VCF file

I have a vcf file of WGS of 100 samples.

I want to check how many samples have e.g. deletion or duplication for a given region chrX:1-1000.

What are the steps to get no of samples with SVs ( text file)?

snp

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written 6.1 years ago by GK1610

What have you tried? Have you looked at the bcftools manual?

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written 6.1 years ago by Ram

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