Structural Variants in a VCF file
0
0
Entering edit mode
3.9 years ago
GK1610 ▴ 110

I have a vcf file of WGS of 100 samples.

I want to check how many samples have e.g. deletion or duplication for a given region chrX:1-1000.

What are the steps to get no of samples with SVs ( text file)?

SNP • 583 views
ADD COMMENT
0
Entering edit mode

What have you tried? Have you looked at the bcftools manual?

ADD REPLY

Login before adding your answer.

Traffic: 1590 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6