This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Assemble A1 and A2 reads using Trinity before running blastx on them

I have two fast file A1.fa and A2.fa for a fungi genome. I want to run blastx on these nucleotide sequences.

My question is do I need to use Trinity to assemble A1.fa and A2.fa files in to a single Trinity.fa file and then run blastx on Trinity.fa file?

assembly trinity blastx
• 1,084 views • link
written by Kash Kash

Why are you considering Trinity? What do you think Trinity does? What do your FASTA files contain? Please describe your premise in as much detail as you can - this question gives us nothing to work with.

• 0 views • link
written by Ram Ram

0 answers

No answers yet.

Log in to answer this question.

More posts like this