Actually, It's a copy of my question on stack overflow: https://stackoverflow.com/questions/62232443/upsetr-how-to-display-all-possible-intersections-how-to-change-margins-of-ups

I'm looking for someone who has faced some similar problems with UpSetR.

I have 10 sets and several hundreds of items to inspect possible intersections. I have 2 problems with upset plots:

Not all intersections are displayed (in the pictures below you can see there are no "1" or "2" unique categories displayed when grouped by freq., or many groups with large numbers of items are not displayed when grouped by degree). The margins of the plot are set in such a way that I can't see how many items there are per set. The code is attached, you can check the illustration on stack overflow.

1. By frequency:

   upset(UpDown, nsets = 10, order.by = "freq", query.legend = "bottom", cutoff =0, set_size.show = TRUE, mainbar.y.label = "Intersection sizes", sets.x.label = "Sets" )

2. By degree:

   upset(UpDown, nsets = 10, order.by = "degree", query.legend = "bottom", cutoff =0, set_size.show = TRUE, mainbar.y.label = "Intersection sizes", sets.x.label = "Sets" )

3.No grouping:

upset(UpDown, nsets = 10)

Thanks in advance for the reply!

Best,

IM