This is a test version of Biostars. For the public version, visit https://www.biostars.org.
GSEA help! Error at index 0

Hi All

I am trying to run GSEA preranked on a ranked DEG list. I am choosing Wnt/bcatenin Hallmark gene subset database and keep getting the following error message.

Error Details

---- Full Error Message ----
Error at index 0 in: "\pub\gsea\gene_sets\h.all.v7.1.symbols.gmt"

The error message doesn't come up when i use the gene matrix database (from website), but only when i use gene subsets.

Thanks
A

rna-seq

0 answers

No answers yet.

Log in to answer this question.