bacterium Gene Ontology From whole genome sequencing
Hi, I have 21 genomes (whole genome sequencing Of Vibrio vulnificus) and I will like to determinate the differences in GO terms Among 2 groups (12 genomes for group 1, and 9 genomes for group 2) so I will like to know how can I do it, it’s any pipeline than you can send or recommend me !!!?? Or any command line software that can I use, with the genomes in fastq/fasta format (I have each genome in contigs, assembled with spades, and the proteins obtained from prodigal for each genome).
Thanks so much !!
• 871 views
•
link
written
by
cabraham03 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
SPADES Result Comparison
written by SomeOne •
-
Contigs number vs NNN gap % in WGS
written by Pegasus •
-
HTSEQ: alignments to combo of two bacterial genomes
written by mk.english232 •
-
convert genome assembly to vcf file (Variant Call Format)
written by cabraham03 •
-
Comparative Genome Analysis of
written by JJ13 •
-
How to get a consensus of the contigs obtained from an assembler like spades?
written by DanielC
-
Closing Gaps in Illumina reads using a reference genome?
written by mwidel •
-
Spades vs Velvelt_why do I get much more contigs with SPADEs?
written by anna •
-
Can we assembly the draft sequences that is assembled by another genome assembler
written by flavobacteria •
-
Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
written by ALchEmiXt
