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How to download/save sample table presented at GEO2R

I'm looking for a solution to download or save the sample table similar to the GEO2R for a GEO dataset.

Here is an example: https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE14468

I can use GEOquery package in R to do that.

gse <- getGEO("GSE14468", destdir = getwd())
phenoData <- (pData(gse[[1]]))

But with this, I have more than 70 columns with some same information and its a long list to choose from. Please suggest me a solution. Thank you.

geo geo2r r
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updated by Maycon • Maycon • written by archisman • archisman

1 answer

Hi archisman. I would suggest you to copy the column name from GEO2R -> put in a vector -> filter the 70 columns from dataset downloaded by getGEO function. Actualy, im looking for a better way to do that since few days but I got nothing different from that solution until now. Bye!

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written by Maycon • Maycon

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